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Resources
RABID-seq pipeline
Previously in Francisco Quintana's lab (HMS/BWH), we designed a pipeline for the analysis and construction of cell-cell interaction networks by RABID-seq together with Iain Clark (who started his own lab at Berkeley) (*Clark, *Gutierrez-Vazquez, *Wheeler et al., Science 2021).
FIND-seq protocol
This is the protocol for analyzing rare cells by FIND-seq previously developed in Francisco Quintana's (HMS/BWH) and Adam Abate's (UCSF) labs together with Iain Clark (who started his own lab at Berkeley) (*Clark, *Wheeler et al., Nature 2023; and Clark et al., Nature 2023).
Zebrafish model of neuroinflammation
A protocol for implementing the method as described in Wheeler et al., Cell 2019.
Genomic data repository
Link to sequencing data from our publications.
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